Tolstorukov, Michael Y: search on Z-Library

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1

Histone locus regulation by the Drosophila dosage compensation adaptor protein CLAMP

Rieder, Leila E., Koreski, Kaitlin P., Boltz, Kara A., Kuzu, Guray, Urban, Jennifer A., Bowman, Sarah K., Zeidman, Anna, Jordan, William T., Tolstorukov, Michael Y., Marzluff, William F., Duronio, Rob

Journal:

Genes & Development

Year:

2017

Language:

english

File:

PDF, 23.04 MB

english, 2017

2

“Antiparallel” DNA Loop in Gal Repressosome Visualized by Atomic Force Microscopy

Konstantin Virnik, Yuri L Lyubchenko, Mikhail A Karymov, Paul Dahlgren, Michael Y Tolstorukov, Szabolcs Semsey, Victor B Zhurkin, Sankar Adhya

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.63 MB

english, 2003

3

Comparative analysis of metazoan chromatin organization

Ho, Joshua W. K., Jung, Youngsook L., Liu, Tao, Alver, Burak H., Lee, Soohyun, Ikegami, Kohta, Sohn, Kyung-Ah, Minoda, Aki, Tolstorukov, Michael Y., Appert, Alex, Parker, Stephen C. J., Gu, Tingting,

Journal:

Year:

2014

Language:

english

File:

PDF, 2.35 MB

english, 2014

4

Differential Occupancy of Two GA-Binding Proteins Promotes Targeting of the Drosophila Dosage Compensation Complex to the Male X Chromosome

Kaye, Emily G., Booker, Matthew, Kurland, Jesse V., Conicella, Alexander E., Fawzi, Nicolas L., Bulyk, Martha L., Tolstorukov, Michael Y., Larschan, Erica

Journal:

Year:

2018

Language:

english

File:

PDF, 8.86 MB

english, 2018

5

Enrichment of HP1a on Drosophila Chromosome 4 Genes Creates an Alternate Chromatin Structure Critical for Regulation in this Heterochromatic Domain

Riddle, Nicole C., Jung, Youngsook L., Gu, Tingting, Alekseyenko, Artyom A., Asker, Dalal, Gui, Hongxing, Kharchenko, Peter V., Minoda, Aki, Plachetka, Annette, Schwartz, Yuri B., Tolstorukov, Michael

Journal:

Year:

2012

Language:

english

File:

PDF, 3.39 MB

english, 2012

6

Histone Variant H2A.Bbd Is Associated with Active Transcription and mRNA Processing in Human Cells

Tolstorukov, Michael Y., Goldman, Joseph A., Gilbert, Cristele, Ogryzko, Vasily, Kingston, Robert E., Park, Peter J.

Journal:

Year:

2012

Language:

english

File:

PDF, 359 KB

english, 2012

7

Alterations in chromatin at antigen receptor loci define lineage progression during B lymphopoiesis

Lion, Mattia, Muhire, Brejnev, Namiki, Yuka, Tolstorukov, Michael Y., Oettinger, Marjorie A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 2.09 MB

2020

8

Chromatin restriction by the nucleosome remodeler Mi-2β and functional interplay with lineage-specific transcription regulators control B-cell differentiation

Yoshida, Toshimi, Hu, Yeguang, Zhang, Zhihong, Emmanuel, Akinola O., Galani, Kiriaki, Muhire, Brejnev, Snippert, Hugo J., Williams, Christine J., Tolstorukov, Michael Y., Gounari, Fotini, Georgopoulos

Journal:

Genes & Development

Year:

2019

Language:

english

File:

PDF, 7.36 MB

english, 2019

9

Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction

Mueller, Britta, Mieczkowski, Jakub, Kundu, Sharmistha, Wang, Peggy, Sadreyev, Ruslan, Tolstorukov, Michael Y., Kingston, Robert E.

Journal:

Genes & Development

Year:

2017

Language:

english

File:

PDF, 1.83 MB

english, 2017

10

Impact of chromatin structure on sequence variability in the human genome

Tolstorukov, Michael Y, Volfovsky, Natalia, Stephens, Robert M, Park, Peter J

Journal:

Nature Structural and Molecular Biology

Year:

2011

Language:

english

File:

PDF, 956 KB

english, 2011

11

Conformational Transitions of DNA Induced by Changing Water Content of the Sample: A Theoretical Study

Tolstorukov, Michael Ye., Maleev, Vladimir Ya.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2000

Language:

english

File:

PDF, 213 KB

english, 2000

12

Multiplexed Illumina sequencing libraries from picogram quantities of DNA

Sarah K Bowman, Matthew D Simon, Aimee M Deaton, Michael Tolstorukov…

Journal:

Year:

2013

Language:

english

File:

PDF, 223 KB

english, 2013

13

Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination

Pulivarthy, Sandhya R., Lion, Mattia, Kuzu, Guray, Matthews, Adam G. W., Borowsky, Mark L., Morris, John, Kingston, Robert E., Dennis, Jonathan H., Tolstorukov, Michael Y., Oettinger, Marjorie A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 3.25 MB

english, 2016

14

Protein–DNA Hydrophobic Recognition in the Minor Groove is Facilitated by Sugar Switching

Michael Y. Tolstorukov, Robert L. Jernigan, Victor B. Zhurkin

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.12 MB

english, 2004

15

Non-neutral evolution of H3.3-encoding genes occurs without alterations in protein sequence

Muhire, Brejnev M., Booker, Matthew A., Tolstorukov, Michael Y.

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 2.59 MB

english, 2019

16

Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming

West, Jason A., Cook, April, Alver, Burak H., Stadtfeld, Matthias, Deaton, Aimee M., Hochedlinger, Konrad, Park, Peter J., Tolstorukov, Michael Y., Kingston, Robert E.

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 2.05 MB

english, 2014

17

The Long Noncoding RNAs NEAT1 and MALAT1 Bind Active Chromatin Sites

West, Jason A., Davis, Christopher P., Sunwoo, Hongjae, Simon, Matthew D., Sadreyev, Ruslan I., Wang, Peggy I., Tolstorukov, Michael Y., Kingston, Robert E.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.62 MB

english, 2014

18

A Novel Roll-and-Slide Mechanism of DNA Folding in Chromatin: Implications for Nucleosome Positioning

Michael Y. Tolstorukov, Andrew V. Colasanti, David M. McCandlish, Wilma K. Olson, Victor B. Zhurkin

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.68 MB

english, 2007

19

Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context

Alekseyenko, Artyom A., Ho, Joshua W. K., Peng, Shouyong, Gelbart, Marnie, Tolstorukov, Michael Y., Plachetka, Annette, Kharchenko, Peter V., Jung, Youngsook L., Gorchakov, Andrey A., Larschan, Erica,

Journal:

Year:

2012

Language:

english

File:

PDF, 1.73 MB

english, 2012

20

46. PAN-CANCER ANALYSIS OF ORTHOTOPIC PATIENT DERIVED XENOGRAFTS FROM BRAIN METASTASES

Zeng, Yu, Pelton, Kristine, Yerrum, Smitha, Kao, Pei-Lun, Sinai, Claire, Tran, Tony, Sinha, Rileen, Shetty, Aniket, Tolstorukov, Michael Y, Jaber, Aliya, Freitas, Dylan E, Pisano, William, Verselis, S

Journal:

Neuro-Oncology Advances

Year:

2020

File:

PDF, 88 KB

2020

21

Loss of the tumor suppressor Snf5 leads to aberrant activation of the Hedgehog-Gli pathway

Jagani, Zainab, Mora-Blanco, E Lorena, Sansam, Courtney G, McKenna, Elizabeth S, Wilson, Boris, Chen, Dongshu, Klekota, Justin, Tamayo, Pablo, Nguyen, Phuong T L, Tolstorukov, Michael

Journal:

Nature Medicine

Year:

2010

Language:

english

File:

PDF, 649 KB

english, 2010

22

Resolving Heart Regeneration by Replacement Histone Profiling

Goldman, Joseph Aaron, Kuzu, Guray, Lee, Nutishia, Karasik, Jaclyn, Gemberling, Matthew, Foglia, Matthew J., Karra, Ravi, Dickson, Amy L., Sun, Fei, Tolstorukov, Michael Y., Poss, Kenneth D.

Journal:

Developmental Cell

Year:

2017

Language:

english

File:

PDF, 4.87 MB

english, 2017

23

Design and analysis of ChIP-seq experiments for DNA-binding proteins

Kharchenko, Peter V, Tolstorukov, Michael Y, Park, Peter J

Journal:

Nature Biotechnology

Year:

2008

Language:

english

File:

PDF, 370 KB

english, 2008

24

CpG Islands Recruit a Histone H3 Lysine 36 Demethylase

Neil P. Blackledge, Jin C. Zhou, Michael Y. Tolstorukov, Anca M. Farcas, Peter J. Park, Robert J. Klose

Journal:

Year:

2010

Language:

english

File:

PDF, 1.52 MB

english, 2010

25

Organization of DNA in a bacterial nucleoid

Tolstorukov, Michael Y., Virnik, Konstantin, Zhurkin, Victor B., Adhya, Sankar

Journal:

BMC Microbiology

Year:

2016

Language:

english

File:

PDF, 2.17 MB

english, 2016

26

Enhanced chromatin accessibility of the dosage compensated Drosophila male X-chromosome requires the CLAMP zinc finger protein

Urban, Jennifer, Kuzu, Guray, Bowman, Sarah, Scruggs, Benjamin, Henriques, Telmo, Kingston, Robert, Adelman, Karen, Tolstorukov, Michael, Larschan, Erica, Akhtar, Asifa

Journal:

Year:

2017

Language:

english

File:

PDF, 6.27 MB

english, 2017

27

Analysis of the primary structure of chromatin with next-generation sequencing

Tolstorukov, Michael Y, Kharchenko, Peter V, Park, Peter J

Journal:

Year:

2010

Language:

english

File:

PDF, 1.97 MB

english, 2010

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